PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019262001
Common NameGSBRNA2T00019262001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-X1
Protein Properties Length: 919aa    MW: 100564 Da    PI: 8.1105
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019262001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.51.2e-07230248119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C++ CH G+C+pC+
  GSBRNA2T00019262001 230 CGRHRCERSCHVGNCDPCQ 248
                          ******************6 PP

2zf-NF-X117.11.2e-05294311118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C++ CH GpC+ C
  GSBRNA2T00019262001 294 CGNHLCSEVCHAGPCGDC 311
                          ****************99 PP

3zf-NF-X121.93.8e-07353370118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG H+C + CH G+CppC
  GSBRNA2T00019262001 353 CGLHTCTEACHGGDCPPC 370
                          ****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060081.63E-5153213No hitNo description
SMARTSM004380.023175193IPR000967Zinc finger, NF-X1-type
PfamPF014226.7177192IPR000967Zinc finger, NF-X1-type
CDDcd060088.18E-12220268No hitNo description
SMARTSM004381.5E-4230249IPR000967Zinc finger, NF-X1-type
PfamPF014221.6E-5230247IPR000967Zinc finger, NF-X1-type
CDDcd060081.31E-7284329No hitNo description
SMARTSM004386.7E-4294313IPR000967Zinc finger, NF-X1-type
PfamPF014221.8E-4294311IPR000967Zinc finger, NF-X1-type
CDDcd060085.36E-12343390No hitNo description
SMARTSM004388.5E-5353372IPR000967Zinc finger, NF-X1-type
PfamPF014225.0E-4353370IPR000967Zinc finger, NF-X1-type
SMARTSM0043812408434IPR000967Zinc finger, NF-X1-type
PfamPF014220.021408421IPR000967Zinc finger, NF-X1-type
CDDcd060081.60E-5428459No hitNo description
PfamPF014220.014432455IPR000967Zinc finger, NF-X1-type
SMARTSM004380.017438457IPR000967Zinc finger, NF-X1-type
SMARTSM004389.8459477IPR000967Zinc finger, NF-X1-type
SMARTSM004380.28512543IPR000967Zinc finger, NF-X1-type
PfamPF014220.093512527IPR000967Zinc finger, NF-X1-type
PfamPF01422180545571IPR000967Zinc finger, NF-X1-type
SMARTSM004380.097552573IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MSSQVRRDRS RFNPQQTWVP RGSSTSIAVV NEPTERSSES LHAGSTPSRP AYLQRQHNSS  60
GHSPYNQHQR SNVTAPPPPN NAPGTRPDNR QRVASNTRPV NEWKRVLLLN LPYSLCPGCQ  120
SVQLTSSREI SYRCFCGKRK DPPSDPYLTP HSCGEPCGKP LEKEFTAETA KEDLCPHVCV  180
LQCHPGPCPP CKAFAPPRSC PCGKKMIHTR CSERRSVLVC GQRCEKLLNC GRHRCERSCH  240
VGNCDPCQVL VNATCFCKKN VETVVCGDMN VKGELKAEDG VYSCNLNCGK GLGCGNHLCS  300
EVCHAGPCGD CDLLPSRVKT CYCGKKRLEE EIRESCLEPV PSCSNICLKL LPCGLHTCTE  360
ACHGGDCPPC FVQVTQKCRC ESTSRTVECY ITSSDFVCIK PCGRKKNCGR HRCSERCHLS  420
GDLDTHLCQL PCGKNLRCLQ HSCESLCHSG HCPPCFEPCG HCATHGCHFG DCPPCSAPVE  480
KKCVGGHVVL RNIPCGLRDI RCNKTCGKTR RCGTHACART CHQEPCDAYN ESEAGLRVVT  540
CGQTCGAPRR DCRHACAALC HPSQSCPDSR CEFPVTITCS CGRITATVPC DAGSNLRVES  600
LYEASVLQKL PTTLQPVESS GNRIPLGQRK LLCDDECAKL ERKRVDITPL NLDYVHFSEN  660
SAMTEIISDI YRRDPKWVLA VEERFKLLVL GKARGSASSV LKAHVFCPMP KDKRDTVRLL  720
AERWKLASKP PTRIIGARGG PHPPCFDPLV DIDPRLVVSL LDLPREANIN ALVLRFGGEC  780
VLVWLNDKNA LVVFHDHARA TTAMRRLDYG SVYHGAVVVQ NGSQSPSLGN AMGSSSSDAQ  840
KGNPWKKAVI QESDDDTWEA DIQASTWRSV TSNTPTLTSV NRWSVLEPEK PLVKTEGSSS  900
SKSASKQPVE SSSEESGG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.166121e-94leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019262001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716091.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A078GB720.0A0A078GB72_BRANA; BnaC08g42350D protein
STRINGBra031704.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]